SEATTLE - Biomedical researcher David Baker wants you to
know that the key to an AIDS vaccine or a cure for cancer may be
sitting under a layer of dust in your storage closet or on your
desk doing nothing but running a screen saver.
Your outdated or idle computer may be just what Baker needs to
turn his ideas into scientific breakthroughs.
Baker, 43, a researcher at the University of Washington,
realized about two years ago that he had neither the computing
power to uncover protein structures at the atomic level nor the
money to buy time elsewhere on supercomputers.
But as he was realizing his project's limitations, a team of
researchers at the University of California at Berkeley decided to
share the software they had developed to harness home computing
power to search for intelligent life in the universe, a project
that is the biggest beneficiary of donated computer time from
nearly 953,000 computers.
Distributed computing was pioneered at the University of
California but the idea has now been adopted by others, including
Google, which offers a link called Google Compute for its toolbar
to let people donate idle computer time to worthwhile projects.
Baker's Rosettahome project is attracting computer users who
like the idea of helping find a cure for cancer and admire the way
Baker has involved regular people in his research work.
"We're getting these volunteer virtual communities popping up
that are doing wonderful things," Baker said. "People like to get
together for good causes."
Baker's research could one day lead to cures to diseases from
cancer to Alzheimer's, if his lab helps scientists better dangerous
mutations in DNA.
The project takes a more direct approach to other diseases,
including the search for an HIV vaccine. For example, they hope to
develop a way to help the body recognize critical parts of the HIV
protein so that it can no longer hide from the body's immune
system, Baker said.
Nearly 60,000 people are donating computer power to Baker's
research - equivalent to the power of one supercomputer. His hopes
to increase that number by at least tenfold - enough to lead to
major scientific breakthroughs.
The project now has participants from around the world, but the
earliest donor of idle computer time came from across campus at the
university's Housing and Food Services.
"I knew the kind of power that personal computers could have if
you pulled them all together," said Ethan Owens, 27, an employee
of the department who had been donating home computer time to the
search for extraterrestrial life.
Owens first approached the Astronomy Department, which didn't
need his department's 200 computers, so he took his offer to Baker.
Baker and Owens' first conversations happened a short time after
the University of California started offering its software to
anyone who wanted to use it. Soon, dormitory front desks, computer
labs, maintenance offices and kitchen business centers became part
of Baker's lab for Rosettahome.
By the time school started last fall, the two organizations were
working together to recruit students to put the networking software
on their personal computers and the project has grown both on and
off campus ever since.
Many of the most active volunteers are cancer survivors or
people who have lost close friends or relatives to the disease.
Philip Williams, 53, who writes computer software for the
federal government in Washington, D.C., said he started pulling old
Macs out of the closet when he learned more about the Rosetta
project. The two-time Hodgkin's survivor has a small wireless
network at home and plans to add more computers soon.
Although he continues to contribute computer time to a few other
projects, Williams' loyalty clearly lies with Baker.
"Baker's group has a way of making people think that they are
part of the project," said Williams, who has also volunteered to
help diagnose problems other participants are having with the
software.
Baker said users don't just think they are important to the
project, they really are.
"As a scientist, one of the things you're supposed to do is
outreach. Outreach has become fundamental to solving the problem,"
Baker said, pointing out that his team has gotten some good ideas
about new research angles by involving the general public in the
research as much as possible. Some of these ideas are generated on
the project's message boards.
The volunteers also have recruited more people to help, have
made useful suggestions about software issues and have helped test
new software versions before they are sent out to everyone on
Rosettahome.
Williams said Baker's participation in project message boards
and the scientist's direct communication with the amateur
scientists who contribute computer time has made Rosetta much more
than a quirky project of the month.
"This is not trivial work that this guy's doing," Williams
said. "Because he's exploring not just the biomedical side of
this, but how to go about doing the computer, there's an
opportunity for people who don't have a medical background to truly
contribute."
David P. Anderson, director of Berkeley's open source software
project that made Rosettahome possible, said Baker's lab has done
a particularly good job of connecting the participants to the
science, including sharing the potential medical impact of the
tests.
"Hopefully, Rosetta is setting a standard that the other
projects will have to live up to if they want to hold onto their
participants," Anderson said.
Mark Pottorff, 40, a computer programmer in Rochester, Minn.,
was contributing computer time for the search for extraterrestrial
life when he heard about Rosettahome and decided to switch.
"The outcome is much more beneficial," and more likely to get
results than a search for ET, Pottorff said, adding, "If you reach
him, he's still 100 million light years away."
For More Information:
Rosetta
Berkeley Open Infrastructure for Network Computing
Google Compute